A production-grade demo pipeline designed to showcase modern Nextflow architecture, testing, AWS execution, benchmarking, and scientific reporting.
End-to-end WGS workflow with GIAB benchmarking
Scientific correctness is only one dimension. Each portfolio project also demonstrates the engineering practices required to operate bioinformatics workflows reliably in production.
Every process is designed with module-level nf-test coverage plus end-to-end smoke testing.
An optional profile compares calls against a GIAB truth set (HG002) using bcftools and hap.py, reporting precision, recall, and F1.
The same workflow can move from local development to AWS Batch without rewriting scientific logic.
